• Basic notions for the analysis of large two-mode networks

Null models #

Carefully chosen null models are important to bipartite network analysis.

• Motifs: Artefacts in statistical analyses of network motifs: general framework and application to metabolic networks

Projection #

See also http://en.wikipedia.org/wiki/Bipartite_network_projection .

Often, a bipartite network is projected onto one of the node space. There are many ways to do it. One can use simple projection by counting the number of shared neighbors. One can also consider each row or column as a vector and calculate the similarity between the vectors. See Similarity.

• Using networks to measure similarity between genes: association index selection
• Using Random Walks to Generate Associations between Objects
  • YCN-RW: Bipartite Projections - code

Community structure #

• http://arxiv.org/abs/1403.2933 - Efficiently inferring community structure in bipartite networks. Stochastic block model for Bipartite network
  • Project homepage

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